Publications

Within the framework of this collaborative research centre our team published many publications. All works are listed here for you.

Modeling the Shape of Synaptic Spines by Their Actin Dynamics

Mayte Bonilla-Quintana, Florentin Wörgötter, Christian Tetzlaff, Michael Fauth

Proved: 24th February 2020

Published: 10th March 2020

https://doi.org/10.3389/fnsyn.2020.00009

Zur Publikation

Leaflet-dependent distribution of PtdIns`{`4,5`}`P2 in supported model membranes

Jonas Schäfer, Jessica Nehls, Markus Schön, Ingo P. Mey, Claudia Steinem

Published: 17. January 2020
https://doi.org/10.1162/netn_a_00086

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Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks

Mohamed Marouf, Pierre Machart, Vikas Bansal, Christoph Kilian, Daniel S. Magruder, Christian F. Krebs, Stefan Bonn

Received: 25. August 2018; Accepted: 13 December 2019;
Published: 9 January 2020

https://doi.org/10.1038/s41467-019-14018-z

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2020

Explainable Deep Learning for Augmentation of Small RNA Expression Profiles

Jelena Fiosina, Maksims Fiosins, Stefan Bonn

Published: 18. Dec. 2019

https://doi.org/10.1162/netn_a_00086

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The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43

S. Keihani, V. Kluever, S. Mandad, V. Bansal, R. RahmanE. FritschL. Caldi Gomes, A. GärtnerS. KüglerH. UrlaubJ. D. WrenS. BonnS. O. RizzoliE. F. Fornasiero

Received: 5 July 2019;  Accepted: 23 October 2019; Published: 18. Dec. 2019

https://doi.org/10.1126/sciadv.aay2670

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Live-cell STED nanoscopy of mitochondrial cristae

Till Stephan, Axel Roesch, Dietmar Riedel & Stefan Jakobs
Received: 10 June 2019
Accepted: 13 August 2019
https://doi.org/10.1162/netn_a_00086

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Tagger—A Swiss army knife for multiomics to dissect cell type–specific mechanisms of gene expression in mice

Lech Kaczmarczyk, Vikas Bansal, Ashish Rajput, Raza-ur Rahman, Wiesław Krzyżak, Joachim Degen, Stefanie Poll, Martin Fuhrmann, Stefan Bonn, Walker Scot Jackson

Received: 13 May 2019
Accepted: 17 July 2019

Published: 8 August 2019
https://doi.org/10.1371/journal.pbio.3000374

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Correlative STED super-resolution light and electron microscopy on resin sections

Christian A Wurm, Heinz Schwarz, Daniel C. Jans ,Dietmar Riedel, Bruno M. Humbel, Stefan Jakobs

Received: 30 April 2019
Accepted: 19 June 2019 Published: 16 July 2019
https://doi.org/10.1088/1361-6463/ab2b31

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Cytosolic Trapping of a Mitochondrial Heat Shock Protein Is an Early Pathological Event in Synucleinopathies

E ́ va M. Szego, Antonio Dominguez-Meijide, Ellen Gerhardt, Annekatrin König, David J. Koss, Wen Li, Raquel Pinho, Christiane Fahlbusch, Mary Johnson, Patricia Santos, Anna Villar-Pique ́,Tobias Thom, Silvio Rizzoli, Matthias Schmitz, Jiayi Li, Inga Zerr, Johannes Attems, Olaf Jahn, Tiago F. Outeiro

Published: July 2019
https://doi.org/10.1016/j.celrep.2019.06.009

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Principles underlying the input-dependent formation and organization of memories

Juliane Herpich and Christian Tetzlaff
Posted Online May 28, 2019
https://doi.org/10.1162/netn_a_00086

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Deep Learning and Random Forest-Based Augmentation of sRNA Expression Profiles

Jelena Fiosina, Maksims Fiosins, Stefan Bonn
Published: 9. May 2019
https://doi.org/10.1162/netn_a_00086

Zur Publikation

A Theoretical Framework to Derive Simple, Firing-Rate-Dependent Mathematical Models of Synaptic Plasticity

Janne Lappalainen, Juliane Herpich, Christian Tetzlaff

Received: 26 November 2018; Accepted: 10 April 2019;
Published: 08 May 2019.

doi: 10.3389/fncom.2019.00026

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Fluorinated nanobodies for targeted molecular imaging of biological samples using nanoscale secondary ion mass spectrometry

Selda Kabatas, Paola Agüi-Gonzalez, Rena Hinrichs, Sebastian Jähne,  Felipe Opazo, Ulf Diederichsen,  Silvio O. Rizzoli and Nhu T. N. Phan

Received 31st March 2019
Accepted 24th April 2019

DOI: 10.1039/c9ja00117d

Zur Publikation

2019

Newly produced synaptic vesicle proteins are preferentially used in synaptic transmission

Truckenbrodt S, Viplav A, Jähne S, Vogts A, Denker A, Wildhagen H, Fornasiero EF, Rizzoli SO.
EMBO J. 2018 Aug 1;37(15). pii: e98044. doi: 10.15252/embj.201798044

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Robust nanoscopy of a synaptic protein in living mice by organic-fluorophore labeling

Jennifer-Magdalena Masch, Heinz Steffens, Joachim Fischer, Johann Engelhardt, Jasmine Hubrich, Jan Keller-Findeisen, Elisa D’Este, Nicolai T. Urban, Seth G. N. Grant, Steffen J. Sahl, Dirk Kamin, and Stefan W. Hell

PNAS August 21, 2018 115 (34) E8047-E8056; published ahead of print August 6, 2018

Zur Publikation

Membrane binding, internalization, and sorting of alpha-synuclein in the cell

Caterina Masaracchia1, Marilena Hnida1, Ellen Gerhardt1, Tomás Lopes da Fonseca1, Anna Villar-Pique1, Tiago Branco3, Markus A. Stahlberg4, Camin Dean4, Claudio O. Fernández2, Ira Milosevic3and Tiago F. Outeiro1,5,6*

Masaracchia et al. Acta Neuropathologica Communications (2018) 6:79

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Alpha-synuclein deregulates the expression of COL4A2 and impairs ER-Golgi function

Isabel Paiva, Gaurav Jain, Diana F. Lázaro, Kristina Gotovac Jerčić, Thomas Hentrich, Cemil Kerimoglu, Raquel Pinho, Èva M. Szegő, Susanne Burkhardt, Vincenzo Capece, Rashi Halder, Rezaul Islam, Mary Xylaki, Lucas A. Caldi Gomes, Anna-Elisa Roser, Paul Lingor, Julia M. Schulze-Hentrich, Fran Borovečki, André Fischer, Tiago F. Outeiro

PII:S0969-9961(18)30392-9DOI: doi:10.1016/j.nbd.2018.08.001 Reference: YNBDI 4242

To appear in: Neurobiology of Disease Received date: 9 April 2018 Revised date: 12 July 2018 Accepted date: 3 August 2018

Zur Publikation

Circulating miRNAs as Diagnostic Biomarkers for Parkinson’s Disease

Isabel Paiva, Gaurav Jain, Diana F. Lázaro, Kristina Gotovac Jerčić, Thomas Hentrich, Cemil Kerimoglu, Raquel Pinho, Èva M. Szegő, Susanne Burkhardt, Vincenzo Capece, Rashi Halder, Rezaul Islam, Mary Xylaki, Lucas A. Caldi Gomes, Anna-Elisa Roser, Paul Lingor, Julia M. Schulze-Hentrich, Fran Borovečki, André Fischer, Tiago F. Outeiro

PII:S0969-9961(18)30392-9DOI: doi:10.1016/j.nbd.2018.08.001 Reference: YNBDI 4242

To appear in: Neurobiology of Disease Received date: 9 April 2018 Revised date: 12 July 2018 Accepted date: 3 August 2018

Zur Publikation

Piccolo promotes vesicle replenishment at a fast central auditory synapse

Isabel Paiva, Gaurav Jain, Diana F. Lázaro, Kristina Gotovac Jerčić, Thomas Hentrich, Cemil Kerimoglu, Raquel Pinho, Èva M. Szegő, Susanne Burkhardt, Vincenzo Capece, Rashi Halder, Rezaul Islam, Mary Xylaki, Lucas A. Caldi Gomes, Anna-Elisa Roser, Paul Lingor, Julia M. Schulze-Hentrich, Fran Borovečki, André Fischer, Tiago F. Outeiro

PII:S0969-9961(18)30392-9DOI: doi:10.1016/j.nbd.2018.08.001 Reference: YNBDI 4242

To appear in: Neurobiology of Disease Received date: 9 April 2018 Revised date: 12 July 2018 Accepted date: 3 August 2018

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Sensing α-Synuclein From the Outside via the Prion Protein: Implications for Neurodegeneration

Inês Caldeira Brás, MSc,1 Luísa V. Lopes, PhD2 and Tiago Fleming Outeiro, PhD1,3,4,5*
Movement Disorders,2018
Received: 22 May 2018; Revised: 24 July 2018; Accepted: 26 July 2018 DOI: 10.1002/mds.27478

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X10 expansion microscopy enables 25-nm resolution on conventional microscopes

Truckenbrodt S, Maidorn M, Crzan D, Wildhagen H, Kabatas S, Rizzoli SO.
EMBO Rep. 2018 Jul 9. pii: e45836. doi: 10.15252/embr.201845836

Zur Publikation

Robust nanoscopy of a synaptic protein in living mice by organic-fluorophore labeling

Jennifer-Magdalena Masch, Heinz Steffens, Joachim Fischer, Johann Engelhardt, Jasmine Hubrich, Jan Keller-Findeisen, Elisa D’Este, Nicolai T. Urban, Seth G. N. GrantSteffen J. Sahl, Dirk KaminStefan W. Hell

Published: 6 July 2018

https://doi.org/10.1073/pnas.1807104115

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2018
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